Complete vs. Incomplete Reality
Mmm. That's where I think this thought experiment can be misleading. This paranormal stuff, ghosts and the like, are all quite ancient registers of our evolutionary history. We used to believe in animism, fire has life, the Gods get mad and the dead roam the life of the living, wanting revenge or looking to quell a pain before going to the after life.
The evidence for almost all of this is non-existent. Ghosts are hallucinations, fire is not alive and the Gods don't control thunder or love. Another thing is to talk about something like intuition, in which very little is known - it's very hard to study. But plainly some people have good intuitions other do not.
The case of the photoreceptors proves that one mutation can reveal an aspect of reality most of us just cannot experience. We can, if feeling suggestible, feel ghostly presences and even make sense out of the idea that thunder is due to some human-like God wanting to harm us. We have access to these things already, but the reality attributed to them does not withstand scrutiny, so far.
The kind of thing I have in mind, hinted at photoreceptors are real phenomena which we cannot access even if we wanted to. We can't see more colours than the ones we see, save very few exceptions. Likewise, we cannot smell nearly as well as most other mammals. In this vein, an intelligent alien (if they exist - we don't know, prospects are iffy) could well organize reality in different ways.
They could smell like dogs, see much more of the visual spectrum and intuit how non-mental stuff leads to mental stuff, the way we intuit how apples fall. The difference here is one of lack of capacities not venturing into areas which lead back to the dark ages, burning witches based on testimony.
So I get your drift, but I'd be cautious.