[1] We live in an ordered universe that can be understood by humans.
[2] The universe consists entirely of physical substances - matter and energy.
[3] These substances behave in accordance with scientific principles, laws.
[4] Scientific laws are mathematical in nature.
[5] The same scientific laws apply throughout the universe and at all times.
[6] The behaviors of substances are caused.
[7] Substances are indestructible, although they can change to something else.
[8] The universe is continuous. Between any two points there is at least one other point.
[9] Space and time are separate and absolute.
[10] Something can not be created from nothing. — T Clark
I don't think most of these are presuppositions of science.
1. I mean, science is an attempt to understand the universe by humans, so... yeah this one's a presupposition, but a rather agreeable, obvious one. The alternative to trying to understand the universe is not trying, and not trying doesn't seem to have many returns on (non)investment, so we might as well try.
2. Nope, not a presupposition of science in the slightest. Science has access to matter, and thus that naturally makes it easier to find out things about matter than ... things we don't have access to. It's not a presupposition of science, our focus on the physical is just an inevitable consequence of what it means to do science. Plenty of scientists do science just fine while also presupposing physical substances AREN'T the only things that exist. I'm sure some scientists do science well while assuming physical substances don't exist at all (surely some scientists are idealists of some kind).
3. Maybe?? I don't even think this one is - just because science tries to find principles and laws to describe behavior doesn't necessarily mean that in order to do science, one must presuppose substances all behave consistently in according with those principles and laws. I'm not convinced of this one, but I suppose I'm open to a solid agument that science presupposes this.
4. It happens to be the case that a lot of what we know about matter is describable mathematically - the fact that that's the case doesn't require a presupposition that it's a universal truth. I don't think this one counts.
5. Most scientists presuppose this, I think, but I again don't think it's a necessary presupposition. Someone could easily conduct science without that presupposition, right? Like one can imagine certain things we call laws fluctuating over time.
6. Yeah this one's probably fair to call a presupposition, although many scientists I'm sure are very questioning of the very concept of causality itself. So I'm inclined to say a very tentative 'yes, you're right' about this one.
7. Not a presupposition. This is a belief that's a consequence of experience and observation. If human scientists lived in a different universe where we experienced and observed very different things, we could easily have a science that has substances which are destructable. Come to think of it... don't matter and antimatter destroy each other? I give this one a 0/10, big fat NO on that being a presupposition.
8. Not a presupposition. Not even a universal belief among scientists.
9. Definitely a big fat no on this one. Separate? Have you literally never heard of spacetime?
10. Not a presupposition. At best, it's a similar situation to 7 - a belief that arose from experience and observation. Different observations could have yielded a different scientific belief.